IL_6MTC_232

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_232 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.1908

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6MTC|1|9|U|1101
6MTC|1|9|G|1102
6MTC|1|9|C|1103
*
6MTC|1|9|G|1129
6MTC|1|9|G|1130
6MTC|1|9|G|1131

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain NN

40S ribosomal protein S13

Chain RR

40S ribosomal protein S17

Chain aa

40S ribosomal protein S26

Chain bb

40S ribosomal protein S27