IL_6MTC_273

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUCCC*GUCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_273 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3083

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6MTC|1|5|C|519
6MTC|1|5|U|520
6MTC|1|5|C|521
6MTC|1|5|C|522
6MTC|1|5|C|523
*
6MTC|1|5|G|638
6MTC|1|5|U|639
6MTC|1|5|C|640
6MTC|1|5|G|641
6MTC|1|5|G|642

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L13