IL_6MTC_287

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

6MTC|1|5|A2M|3785, 6MTC|1|5|C|3791, 6MTC|1|5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_287 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.3172

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6MTC|1|5|C|3781
6MTC|1|5|5MC|3782
6MTC|1|5|A|3783
6MTC|1|5|A|3784
6MTC|1|5|A2M|3785
6MTC|1|5|U|3786
6MTC|1|5|G|3787
6MTC|1|5|C|3788
6MTC|1|5|C|3789
6MTC|1|5|U|3790
6MTC|1|5|C|3791
6MTC|1|5|OMG|3792
*
6MTC|1|5|C|3808
6MTC|1|5|G|3809
6MTC|1|5|C|3810
6MTC|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

60S ribosomal protein L41