IL_6MTC_300

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCACU*A(OMG)

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_300 not in the Motif Atlas

Homologous match to IL_8C3A_416

Geometric discrepancy: 0.0957

The information below is about IL_8C3A_416

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

6MTC|1|9|C|491
6MTC|1|9|C|492
6MTC|1|9|A|493
6MTC|1|9|C|494
6MTC|1|9|U|495
*
6MTC|1|9|A|508
6MTC|1|9|OMG|509

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4, X isoform

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24