IL_6MTC_301

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6MTC|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_301 not in the Motif Atlas

Geometric match to IL_2OIU_003

Geometric discrepancy: 0.3376

The information below is about IL_2OIU_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6MTC|1|9|G|925
6MTC|1|9|A|926
*
6MTC|1|9|U|1015
6MTC|1|9|U|1016
6MTC|1|9|U|1017

Current chains

Chain 9

18S rRNA

Nearby chains

Chain NN

40S ribosomal protein S13

Chain bb

40S ribosomal protein S27