IL_6MTC_302
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGGCC*GAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTC_302 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.2659
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6MTC|1|9|C|927
6MTC|1|9|G|928
6MTC|1|9|G|929
6MTC|1|9|C|930
6MTC|1|9|C|931
*
6MTC|1|9|G|1010
6MTC|1|9|A|1011
6MTC|1|9|A|1012
6MTC|1|9|U|1013
6MTC|1|9|G|1014
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain BB
- 40S ribosomal protein S3a
- Chain NN
- 40S ribosomal protein S13
- Chain bb
- 40S ribosomal protein S27
- Chain c
- 60S ribosomal protein L30
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