IL_6MTD_003

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_003 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1477

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

6MTD|1|5|G|16
6MTD|1|5|A|17
6MTD|1|5|C|18
*
6MTD|1|8|G|139
6MTD|1|8|C|140
6MTD|1|8|C|141

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain N

eL15

Chain X

uL23

Chain h

uL29

Chain j

eL37