IL_6MTD_015

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

6MTD|1|5|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_015 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.2575

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6MTD|1|5|C|339
6MTD|1|5|C|340
6MTD|1|5|G|341
6MTD|1|5|G|342
*
6MTD|1|8|C|32
6MTD|1|8|G|33

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain C

uL4

Chain L

eL13

Chain N

eL15

Chain j

eL37