IL_6MTD_026

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6MTD|1|5|G|666, 6MTD|1|5|A|667, 6MTD|1|5|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_026 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2597

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6MTD|1|5|G|487
6MTD|1|5|G|488
*
6MTD|1|5|C|665
6MTD|1|5|G|666
6MTD|1|5|A|667
6MTD|1|5|C|668
6MTD|1|5|C|669

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain Q

eL18

Chain r

el28