IL_6MTD_031

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCC*GUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_031 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.3982

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6MTD|1|5|C|521
6MTD|1|5|C|522
6MTD|1|5|C|523
*
6MTD|1|5|G|638
6MTD|1|5|U|639
6MTD|1|5|C|640
6MTD|1|5|G|641

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13