3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGAUC*G(B8Q)GCAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: B8Q

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTD_050 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.3076
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6MTD|1|5|G|1425
6MTD|1|5|G|1426
6MTD|1|5|A|1427
6MTD|1|5|U|1428
6MTD|1|5|C|1429
*
6MTD|1|5|G|1455
6MTD|1|5|B8Q|1456
6MTD|1|5|G|1457
6MTD|1|5|C|1458
6MTD|1|5|A|1459
6MTD|1|5|C|1460

Current chains

Chain 5
28S rRNA

Nearby chains

Chain Q
eL18
Chain b
eL29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1284 s