IL_6MTD_059
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6MTD|1|5|A|1637, 6MTD|1|5|A|1638
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_059 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.104
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6MTD|1|5|G|1624
6MTD|1|5|OMG|1625
6MTD|1|5|G|1626
*
6MTD|1|5|U|1636
6MTD|1|5|A|1637
6MTD|1|5|A|1638
6MTD|1|5|U|1639
6MTD|1|5|C|1640
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain N
- eL15
- Chain P
- uL22
- Chain j
- eL37
Coloring options: