IL_6MTD_061
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCUG*CUAGU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_061 not in the Motif Atlas
- Geometric match to IL_8C3A_009
- Geometric discrepancy: 0.351
- The information below is about IL_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6MTD|1|5|G|1685
6MTD|1|5|C|1686
6MTD|1|5|U|1687
6MTD|1|5|G|1688
*
6MTD|1|5|C|1848
6MTD|1|5|U|1849
6MTD|1|5|A|1850
6MTD|1|5|G|1851
6MTD|1|5|U|1852
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- eL29
Coloring options: