IL_6MTD_079
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
- Length
- 28 nucleotides
- Bulged bases
- 6MTD|1|5|C|1935, 6MTD|1|5|A|2041, 6MTD|1|5|G|2049
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_079 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1606
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6MTD|1|5|G|1933
6MTD|1|5|A|1934
6MTD|1|5|C|1935
6MTD|1|5|C|1936
6MTD|1|5|C|1937
6MTD|1|5|C|1938
6MTD|1|5|A|1939
6MTD|1|5|G|1940
6MTD|1|5|A|1941
6MTD|1|5|A|1942
6MTD|1|5|A|1943
6MTD|1|5|A|1944
*
6MTD|1|5|U|2038
6MTD|1|5|G|2039
6MTD|1|5|A|2040
6MTD|1|5|A|2041
6MTD|1|5|A|2042
6MTD|1|5|A|2043
6MTD|1|5|U|2044
6MTD|1|5|G|2045
6MTD|1|5|G|2046
6MTD|1|5|A|2047
6MTD|1|5|U|2048
6MTD|1|5|G|2049
6MTD|1|5|OMG|2050
6MTD|1|5|C|2051
6MTD|1|5|G|2052
6MTD|1|5|C|2053
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- uL3
- Chain I
- uL16
- Chain O
- uL13
- Chain f
- eL33
- Chain m
- eL40
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