3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CCUUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
6MTD|1|5|U|2305
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTD_088 not in the Motif Atlas
Homologous match to IL_8C3A_063
Geometric discrepancy: 0.1356
The information below is about IL_8C3A_063
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.5
Basepair signature
cWW-cWW-tSS-tSH-tHS-cWW-tHS
Number of instances in this motif group
32

Unit IDs

6MTD|1|5|C|2302
6MTD|1|5|C|2303
6MTD|1|5|U|2304
6MTD|1|5|U|2305
6MTD|1|5|G|2306
6MTD|1|5|A|2307
6MTD|1|5|A|2308
6MTD|1|5|G|2309
*
6MTD|1|5|U|2329
6MTD|1|5|G|2330
6MTD|1|5|G|2331
6MTD|1|5|A|2332
6MTD|1|5|G|2333

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain C
uL4
Chain Y
uL24
Chain e
eL32

Coloring options:


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