IL_6MTD_099

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6MTD|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_099 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2223

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6MTD|1|5|C|2646
6MTD|1|5|A|2647
6MTD|1|5|G|2648
*
6MTD|1|5|C|2685
6MTD|1|5|G|2686
6MTD|1|5|U|2687
6MTD|1|5|G|2688

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

eL34