3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CAG*CGUG
Length
7 nucleotides
Bulged bases
6MTD|1|5|U|2687
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTD_099 not in the Motif Atlas
Geometric match to IL_4V9F_076
Geometric discrepancy: 0.2223
The information below is about IL_4V9F_076
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_85599.2
Basepair signature
cWW-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6MTD|1|5|C|2646
6MTD|1|5|A|2647
6MTD|1|5|G|2648
*
6MTD|1|5|C|2685
6MTD|1|5|G|2686
6MTD|1|5|U|2687
6MTD|1|5|G|2688

Current chains

Chain 5
28S rRNA

Nearby chains

Chain g
eL34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.156 s