IL_6MTD_106

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6MTD|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_106 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.142

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6MTD|1|5|A|2850
6MTD|1|5|G|2851
6MTD|1|5|U|2852
6MTD|1|5|C|2853
6MTD|1|5|G|2854
6MTD|1|5|G|2855
*
6MTD|1|5|C|3837
6MTD|1|5|U|3838
6MTD|1|5|G|3839
6MTD|1|5|U|3840

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14