IL_6MTD_107

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6MTD|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_107 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1039

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6MTD|1|5|C|2867
6MTD|1|5|G|2868
6MTD|1|5|U|2869
6MTD|1|5|A|2870
6MTD|1|5|A|2871
6MTD|1|5|C|2872
*
6MTD|1|5|G|2877
6MTD|1|5|G|2878
6MTD|1|5|A|2879
6MTD|1|5|U|2880
6MTD|1|5|A|2881
6MTD|1|5|A|2882
6MTD|1|5|G|2883

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

eL43