IL_6MTD_129
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCGA*UCU
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_129 not in the Motif Atlas
- Geometric match to IL_4N0T_004
- Geometric discrepancy: 0.3051
- The information below is about IL_4N0T_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99358.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6MTD|1|5|G|4095
6MTD|1|5|C|4096
6MTD|1|5|G|4097
6MTD|1|5|A|4098
*
6MTD|1|5|U|4111
6MTD|1|5|C|4112
6MTD|1|5|U|4113
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain BB
- eS1
- Chain G
- eL8
- Chain g
- eL34
Coloring options: