3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GCGA*UCU
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTD_129 not in the Motif Atlas
Geometric match to IL_4N0T_004
Geometric discrepancy: 0.3051
The information below is about IL_4N0T_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_99358.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
8

Unit IDs

6MTD|1|5|G|4095
6MTD|1|5|C|4096
6MTD|1|5|G|4097
6MTD|1|5|A|4098
*
6MTD|1|5|U|4111
6MTD|1|5|C|4112
6MTD|1|5|U|4113

Current chains

Chain 5
28S rRNA

Nearby chains

Chain A
uL2
Chain BB
eS1
Chain G
eL8
Chain g
eL34

Coloring options:


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