IL_6MTD_139

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GUG(A2M)G

Length

8 nucleotides

Bulged bases

6MTD|1|5|G|4522

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_139 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0748

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6MTD|1|5|C|4456
6MTD|1|5|U|4457
6MTD|1|5|C|4458
*
6MTD|1|5|G|4520
6MTD|1|5|U|4521
6MTD|1|5|G|4522
6MTD|1|5|A2M|4523
6MTD|1|5|G|4524

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain V

uL14