IL_6MTD_154

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6MTD|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_154 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2273

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6MTD|1|5|G|4680
6MTD|1|5|A|4681
6MTD|1|5|U|4682
6MTD|1|5|U|4683
6MTD|1|5|A|4684
6MTD|1|5|U|4685
*
6MTD|1|5|A|4705
6MTD|1|5|G|4706
6MTD|1|5|A|4707
6MTD|1|5|A|4708
6MTD|1|5|U|4709
6MTD|1|5|C|4710

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40