IL_6MTD_156
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUCGGAUAGC*GU(OMG)C(2MG)GAGAG
- Length
- 21 nucleotides
- Bulged bases
- 6MTD|1|5|C|4757, 6MTD|1|5|U|4758, 6MTD|1|5|A|4764, 6MTD|1|5|C|4871, 6MTD|1|5|G|4873, 6MTD|1|5|A|4874, 6MTD|1|5|A|4876
- QA status
- Modified nucleotides: OMG, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_156 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.5459
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42231.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-cSS-L
- Number of instances in this motif group
- 2
Unit IDs
6MTD|1|5|C|4756
6MTD|1|5|C|4757
6MTD|1|5|U|4758
6MTD|1|5|C|4759
6MTD|1|5|G|4760
6MTD|1|5|G|4761
6MTD|1|5|A|4762
6MTD|1|5|U|4763
6MTD|1|5|A|4764
6MTD|1|5|G|4765
6MTD|1|5|C|4766
*
6MTD|1|5|G|4868
6MTD|1|5|U|4869
6MTD|1|5|OMG|4870
6MTD|1|5|C|4871
6MTD|1|5|2MG|4872
6MTD|1|5|G|4873
6MTD|1|5|A|4874
6MTD|1|5|G|4875
6MTD|1|5|A|4876
6MTD|1|5|G|4877
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- eL6
- Chain H
- uL6
- Chain M
- eL14
- Chain O
- uL13
- Chain S
- eL20
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