3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CCUCGGAUAGC*GU(OMG)C(2MG)GAGAG
Length
21 nucleotides
Bulged bases
6MTD|1|5|C|4757, 6MTD|1|5|U|4758, 6MTD|1|5|A|4764, 6MTD|1|5|C|4871, 6MTD|1|5|G|4873, 6MTD|1|5|A|4874, 6MTD|1|5|A|4876
QA status
Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTD_156 not in the Motif Atlas
Homologous match to IL_8P9A_352
Geometric discrepancy: 0.5459
The information below is about IL_8P9A_352
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42231.1
Basepair signature
cWW-L-R-L-cWW-L-cWW-cSS-L
Number of instances in this motif group
2

Unit IDs

6MTD|1|5|C|4756
6MTD|1|5|C|4757
6MTD|1|5|U|4758
6MTD|1|5|C|4759
6MTD|1|5|G|4760
6MTD|1|5|G|4761
6MTD|1|5|A|4762
6MTD|1|5|U|4763
6MTD|1|5|A|4764
6MTD|1|5|G|4765
6MTD|1|5|C|4766
*
6MTD|1|5|G|4868
6MTD|1|5|U|4869
6MTD|1|5|OMG|4870
6MTD|1|5|C|4871
6MTD|1|5|2MG|4872
6MTD|1|5|G|4873
6MTD|1|5|A|4874
6MTD|1|5|G|4875
6MTD|1|5|A|4876
6MTD|1|5|G|4877

Current chains

Chain 5
28S rRNA

Nearby chains

Chain E
eL6
Chain H
uL6
Chain M
eL14
Chain O
uL13
Chain S
eL20

Coloring options:


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