IL_6MTD_157

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_157 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3782

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6MTD|1|5|G|4769
6MTD|1|5|U|4770
6MTD|1|5|C|4771
6MTD|1|5|C|4772
6MTD|1|5|C|4773
*
6MTD|1|5|G|4862
6MTD|1|5|G|4863
6MTD|1|5|U|4864
6MTD|1|5|C|4865

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13