IL_6MTD_171
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUCUC*GAUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_171 not in the Motif Atlas
- Homologous match to IL_7RQB_114
- Geometric discrepancy: 0.1427
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
6MTD|1|7|A|32
6MTD|1|7|U|33
6MTD|1|7|C|34
6MTD|1|7|U|35
6MTD|1|7|C|36
*
6MTD|1|7|G|41
6MTD|1|7|A|42
6MTD|1|7|U|43
6MTD|1|7|C|44
6MTD|1|7|U|45
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- uL18
- Chain J
- uL5
Coloring options: