IL_6MTD_198

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6MTD|1|9|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_198 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1427

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6MTD|1|9|G|411
6MTD|1|9|G|412
6MTD|1|9|G|413
*
6MTD|1|9|C|424
6MTD|1|9|G|425
6MTD|1|9|A|426
6MTD|1|9|U|427
6MTD|1|9|U|428
6MTD|1|9|C|429

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain XX

uS12