IL_6MTD_202

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCACU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_202 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.1584

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6MTD|1|9|C|491
6MTD|1|9|C|492
6MTD|1|9|A|493
6MTD|1|9|C|494
6MTD|1|9|U|495
*
6MTD|1|9|A|508
6MTD|1|9|G|509

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain JJ

uS4

Chain YY

eS24