IL_6MTD_206

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_206 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.292

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6MTD|1|9|G|563
6MTD|1|9|A|564
6MTD|1|9|G|565
*
6MTD|1|9|C|585
6MTD|1|9|G|586
6MTD|1|9|A|587
6MTD|1|9|G|588
6MTD|1|9|G|589
6MTD|1|9|A|590
6MTD|1|9|U|591
6MTD|1|9|C|592

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

uS4

Chain ee

eS30