IL_6MTD_208

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_208 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.4523

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6MTD|1|9|A|599
6MTD|1|9|G|600
6MTD|1|9|G|601
6MTD|1|9|G|602
6MTD|1|9|C|603
6MTD|1|9|A|604
6MTD|1|9|A|605
6MTD|1|9|G|606
*
6MTD|1|9|C|636
6MTD|1|9|U|637

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

uS5

Chain JJ

uS4

Chain ee

eS30