IL_6MTD_223
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAC*GUUU
- Length
- 7 nucleotides
- Bulged bases
- 6MTD|1|9|U|1016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_223 not in the Motif Atlas
- Geometric match to IL_3R1C_018
- Geometric discrepancy: 0.2353
- The information below is about IL_3R1C_018
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
6MTD|1|9|G|925
6MTD|1|9|A|926
6MTD|1|9|C|927
*
6MTD|1|9|G|1014
6MTD|1|9|U|1015
6MTD|1|9|U|1016
6MTD|1|9|U|1017
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain NN
- uS15
- Chain bb
- eS27
Coloring options: