3D structure

PDB id
6MTD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GAC*GUUU
Length
7 nucleotides
Bulged bases
6MTD|1|9|U|1016
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTD_223 not in the Motif Atlas
Geometric match to IL_3R1C_018
Geometric discrepancy: 0.2353
The information below is about IL_3R1C_018
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.6
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

6MTD|1|9|G|925
6MTD|1|9|A|926
6MTD|1|9|C|927
*
6MTD|1|9|G|1014
6MTD|1|9|U|1015
6MTD|1|9|U|1016
6MTD|1|9|U|1017

Current chains

Chain 9
18S rRNA

Nearby chains

Chain NN
uS15
Chain bb
eS27

Coloring options:


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