IL_6MTD_227

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6MTD|1|9|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_227 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1522

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6MTD|1|9|G|952
6MTD|1|9|C|953
6MTD|1|9|U|954
6MTD|1|9|A|955
6MTD|1|9|G|956
*
6MTD|1|9|C|967
6MTD|1|9|U|968
6MTD|1|9|U|969
6MTD|1|9|G|970
6MTD|1|9|G|971
6MTD|1|9|A|972
6MTD|1|9|C|973
6MTD|1|9|C|974

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

eS1

Chain OO

uS11