IL_6MTD_230
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6MTD|1|9|C|1153, 6MTD|1|9|U|1155, 6MTD|1|9|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_230 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1221
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6MTD|1|9|C|1091
6MTD|1|9|G|1092
6MTD|1|9|A|1093
*
6MTD|1|9|U|1152
6MTD|1|9|C|1153
6MTD|1|9|U|1154
6MTD|1|9|U|1155
6MTD|1|9|U|1156
6MTD|1|9|G|1157
6MTD|1|9|G|1158
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain CC
- uS5
- Chain LL
- uS17
- Chain NN
- uS15
- Chain WW
- uS8
- Chain XX
- uS12
- Chain bb
- eS27
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