IL_6MTD_232

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_232 not in the Motif Atlas

Geometric match to IL_4WF9_020

Geometric discrepancy: 0.1939

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6MTD|1|9|U|1101
6MTD|1|9|G|1102
6MTD|1|9|C|1103
*
6MTD|1|9|G|1129
6MTD|1|9|G|1130
6MTD|1|9|G|1131

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain RR

eS17

Chain aa

eS26

Chain bb

eS27