IL_6MTD_248

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_248 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.1794

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6MTD|1|9|U|1347
6MTD|1|9|G|1348
6MTD|1|9|G|1349
*
6MTD|1|9|C|1380
6MTD|1|9|G|1381
6MTD|1|9|A|1382

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain CC

uS5

Chain RR

eS17