IL_6MTD_267

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_267 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.1825

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6MTD|1|9|C|1742
6MTD|1|9|G|1743
6MTD|1|9|G|1744
6MTD|1|9|A|1745
6MTD|1|9|U|1746
*
6MTD|1|9|A|1788
6MTD|1|9|G|1789
6MTD|1|9|A|1790
6MTD|1|9|A|1791
6MTD|1|9|G|1792

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

eS6

Chain II

eS8

Chain W

eL24