IL_6MTD_285

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_285 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.1837

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6MTD|1|5|PSU|3715
6MTD|1|5|C|3716
6MTD|1|5|A|3717
6MTD|1|5|A2M|3718
6MTD|1|5|A|3719
6MTD|1|5|G|3720
6MTD|1|5|U|3721
*
6MTD|1|5|A|3732
6MTD|1|5|A|3733
6MTD|1|5|U|3734
6MTD|1|5|G|3735
6MTD|1|5|A|3736
6MTD|1|5|A|3737
6MTD|1|5|G|3738

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain i

eL36