IL_6MTD_286

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

6MTD|1|5|A2M|3785, 6MTD|1|5|C|3791, 6MTD|1|5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_286 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.311

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6MTD|1|5|C|3781
6MTD|1|5|5MC|3782
6MTD|1|5|A|3783
6MTD|1|5|A|3784
6MTD|1|5|A2M|3785
6MTD|1|5|U|3786
6MTD|1|5|G|3787
6MTD|1|5|C|3788
6MTD|1|5|C|3789
6MTD|1|5|U|3790
6MTD|1|5|C|3791
6MTD|1|5|OMG|3792
*
6MTD|1|5|C|3808
6MTD|1|5|G|3809
6MTD|1|5|C|3810
6MTD|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41