IL_6MTD_292

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

6MTD|1|5|U|4634, 6MTD|1|5|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_292 not in the Motif Atlas

Homologous match to IL_8P9A_346

Geometric discrepancy: 0.4551

The information below is about IL_8P9A_346

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21001.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

6MTD|1|5|U|4632
6MTD|1|5|G|4633
6MTD|1|5|U|4634
6MTD|1|5|A|4635
6MTD|1|5|PSU|4636
6MTD|1|5|OMG|4637
*
6MTD|1|5|C|4662
6MTD|1|5|G|4663
6MTD|1|5|A|4664
6MTD|1|5|A|4665
6MTD|1|5|G|4666

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain W

eL24

Chain d

eL31