IL_8P9A_346

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8P9A|1|AR|U|3056, 8P9A|1|AR|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_21001.1

Basepair signature

cWW-L-R-tHW-L-cWW

Number of instances in this motif group

3

Unit IDs

8P9A|1|AR|U|3054
8P9A|1|AR|U|3055
8P9A|1|AR|U|3056
8P9A|1|AR|U|3057
8P9A|1|AR|U|3058
8P9A|1|AR|G|3059
*
8P9A|1|AR|C|3084
8P9A|1|AR|G|3085
8P9A|1|AR|A|3086
8P9A|1|AR|A|3087
8P9A|1|AR|G|3088

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CY

60S ribosomal protein L24-A

Chain DF

60S ribosomal protein L31-A