IL_6MTD_294

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_294 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3164

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6MTD|1|9|G|108
6MTD|1|9|U|109
6MTD|1|9|U|110
6MTD|1|9|A|111
6MTD|1|9|U|112
*
6MTD|1|9|A|349
6MTD|1|9|C|350
6MTD|1|9|G|351
6MTD|1|9|U|352
6MTD|1|9|C|353

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8

Chain LL

uS17