IL_6MTD_295

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_295 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2755

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

6MTD|1|9|C|927
6MTD|1|9|G|928
6MTD|1|9|G|929
6MTD|1|9|C|930
6MTD|1|9|C|931
*
6MTD|1|9|G|1010
6MTD|1|9|A|1011
6MTD|1|9|A|1012
6MTD|1|9|U|1013
6MTD|1|9|G|1014

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain bb

eS27