IL_6MTE_007

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6MTE|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_007 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2616

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6MTE|1|5|C|118
6MTE|1|5|G|119
6MTE|1|5|A|120
6MTE|1|5|A|121
*
6MTE|1|5|U|152
6MTE|1|5|G|153

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

eL8

Chain N

eL15

Chain h

uL29