IL_6MTE_044

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

G(P4U)G*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_044 not in the Motif Atlas

Homologous match to IL_8P9A_249

Geometric discrepancy: 0.2756

The information below is about IL_8P9A_249

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6MTE|1|5|G|1347
6MTE|1|5|P4U|1348
6MTE|1|5|G|1349
*
6MTE|1|5|C|1507
6MTE|1|5|A|1508
6MTE|1|5|C|1509

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain N

eL15

Chain Q

eL18

Chain a

uL15