IL_6MTE_047

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAUC*G(B8Q)GCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8Q

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_047 not in the Motif Atlas

Geometric match to IL_3BBM_001

Geometric discrepancy: 0.387

The information below is about IL_3BBM_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80926.1

Basepair signature

cWW-cWW-tSH-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

6MTE|1|5|G|1425
6MTE|1|5|G|1426
6MTE|1|5|A|1427
6MTE|1|5|U|1428
6MTE|1|5|C|1429
*
6MTE|1|5|G|1455
6MTE|1|5|B8Q|1456
6MTE|1|5|G|1457
6MTE|1|5|C|1458
6MTE|1|5|A|1459
6MTE|1|5|C|1460

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

eL18

Chain b

eL29