IL_6MTE_053

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*UG(B9B)AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_053 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1501

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6MTE|1|5|C|1551
6MTE|1|5|G|1552
6MTE|1|5|A|1553
6MTE|1|5|A|1554
6MTE|1|5|G|1555
*
6MTE|1|5|U|1572
6MTE|1|5|G|1573
6MTE|1|5|B9B|1574
6MTE|1|5|A|1575
6MTE|1|5|G|1576

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain p

eL43