IL_6MTE_104

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6MTE|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_104 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.097

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6MTE|1|5|C|2867
6MTE|1|5|G|2868
6MTE|1|5|U|2869
6MTE|1|5|A|2870
6MTE|1|5|A|2871
6MTE|1|5|C|2872
*
6MTE|1|5|G|2877
6MTE|1|5|G|2878
6MTE|1|5|A|2879
6MTE|1|5|U|2880
6MTE|1|5|A|2881
6MTE|1|5|A|2882
6MTE|1|5|G|2883

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41

Chain p

eL43