3D structure

PDB id
6MTE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUC*GUG(A2M)G
Length
8 nucleotides
Bulged bases
6MTE|1|5|G|4522
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6MTE_135 not in the Motif Atlas
Homologous match to IL_8C3A_116
Geometric discrepancy: 0.0721
The information below is about IL_8C3A_116
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_54650.3
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6MTE|1|5|C|4456
6MTE|1|5|U|4457
6MTE|1|5|C|4458
*
6MTE|1|5|G|4520
6MTE|1|5|U|4521
6MTE|1|5|G|4522
6MTE|1|5|A2M|4523
6MTE|1|5|G|4524

Current chains

Chain 5
28S rRNA

Nearby chains

Chain B
uL3
Chain V
uL14

Coloring options:


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