IL_6MTE_150

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6MTE|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_150 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2344

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6MTE|1|5|G|4680
6MTE|1|5|A|4681
6MTE|1|5|U|4682
6MTE|1|5|U|4683
6MTE|1|5|A|4684
6MTE|1|5|U|4685
*
6MTE|1|5|A|4705
6MTE|1|5|G|4706
6MTE|1|5|A|4707
6MTE|1|5|A|4708
6MTE|1|5|U|4709
6MTE|1|5|C|4710

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40