IL_6MTE_154

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_154 not in the Motif Atlas

Geometric match to IL_2O3Y_003

Geometric discrepancy: 0.2722

The information below is about IL_2O3Y_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.1

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

6MTE|1|5|G|4769
6MTE|1|5|U|4770
6MTE|1|5|C|4771
6MTE|1|5|C|4772
6MTE|1|5|C|4773
*
6MTE|1|5|G|4862
6MTE|1|5|G|4863
6MTE|1|5|U|4864
6MTE|1|5|C|4865

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

uL6

Chain O

uL13