IL_6MTE_164

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_164 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1621

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6MTE|1|5|A|5014
6MTE|1|5|G|5015
6MTE|1|5|A|5016
6MTE|1|5|G|5017
*
6MTE|1|5|C|5032
6MTE|1|5|G|5033
6MTE|1|5|A|5034
6MTE|1|5|U|5035

Current chains

Chain 5

28S rRNA

Nearby chains

Chain II

eS8

Chain R

eL19