IL_6MTE_208

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_208 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1548

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6MTE|1|9|G|665
6MTE|1|9|U|666
6MTE|1|9|U|667
6MTE|1|9|A2M|668
6MTE|1|9|A|669
6MTE|1|9|A|670
6MTE|1|9|A|671
*
6MTE|1|9|U|1161
6MTE|1|9|C|1162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain XX

uS12

Chain aa

eS26